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办公厅Department of General Administration
| 综合处 |
General Office （Division of Security） |
| 秘书一处 |
Division I of Secretariat |
| 秘书二处 |
Division II of Secretariat |
| 文书档案处 |
Division of Documentation and Archives |
| 新闻宣传办公室 |
Information Office |
| 信访处 |
Division of Complaints and Appeal |
人事司Department of Human Resources
|
办公室 |
General Office |
| 干部处 |
Division of Personnel |
| 专业人才管理处 |
Division of Health Professionals Management |
| 劳动工资处 |
Division of Labor and Salary |
规划财务司Department of Planning and Finance
|
办公室 |
General Office |
| 规划与价格处 |
Division of Planning and Pricing |
| 财务与资产处 |
Division of Finance and Property |
| 基建装备处 |
Division of Capital Construction and Equipment |
| 机关财务处 |
Division of Accounting |
| 审计处 |
Division of Auditing |
卫生政策法规司Department of Health Policy and Regulation
| 综合处（卫生部WTO相关事务办公室） |
General Office （Division of Affairs on WTO） |
| 法规处 |
Division of Health Regulation |
| 政策研究一处 |
Division I of Policy Research |
| 政策研究二处 |
Division II of Policy Research |
卫生应急办公室（突发公共卫生事件应急指挥中心）Office of Health Emergency （Center for Public Health Emergency）
| 综合协调处 |
General Office |
| 预测预警处 |
Division of Precaution |
| 应急指导处 |
Division of Emergency Preparedness |
| 应急处理处 |
Division of Emergency Response |
农村卫生管理司Department of Rural Health Management
| 综合处 |
General Office |
| 初级卫生保健处 |
Division of Primary Health Care |
| 合作医疗处 |
Division of Rural Cooperative Medical Scheme |
| 卫生服务规划管理处 |
Division of Rural Health Service Planning and Management |
卫生执法监督司Department of Health Law Enforcement and Supervision
| 综合处 |
General Office |
| 医政监督处 |
Division of Medical Service Supervision |
| 公共卫生监督处 |
Division of Public Health Supervision |
| 食品化妆品卫生监督管理处 |
Division of Food and Cosmetic Hygiene Supervision |
妇幼保健与社区卫生司Department of Maternal and Child Health Care and Community Health
| 综合处 |
General Office |
| 社区卫生处 |
Division of Community Health Care |
| 妇女卫生处 |
Division of Women's Health |
| 儿童卫生处 |
Division of Children's Health |
| 健康促进与教育处 |
Division of Health Promotion and Education |
医政司Department of Medical Administration
| 综合处 |
General Office |
| 医疗机构管理处 |
Division of Medical Institution Management |
| 医疗服务管理处 |
Division of Medical Service Management |
| 血液管理处 |
Division of Blood Management |
| 护理处 |
Division of Nursing |
疾病控制司（全国爱国卫生运动委员会办公室）Department of Disease Control （Office of the National Patriotic Health Campaign Committee）
| 综合处 |
General Office |
| 传染病预防控制管理处 |
Division of Communicable Disease Prevention and Management |
| 艾滋病预防控制管理处 |
Division of AIDS Prevention and Management |
| 免疫规划管理处 |
Division of Immunization Planning and Management |
| 血吸虫病防治管理处 |
Division of Schistosomiasis Prevention and Management |
| 农村改水、环境卫生与地方病处 |
Division Of Rural Water Supply, Environment Sanitation and Endemic Disease Control |
| 非传染病预防控制管理处 |
Division of Non-communicable Disease Control and Management |
| 爱国卫生监督检查处 |
Division of Patriotic Health Supervision and Inspection |
科技教育司Department of Medical Science, Technology and Education
| 综合处 |
General Office |
| 规划处 |
Division of Planning |
| 技术评估与推广处 |
Division of Technology Evaluation and Promotion |
| 认证认可与实验室管理处 |
Division of License and Laboratory Management |
| 教育处 |
Division of Education |
国际合作司（卫生部台港澳事务办公室）Department of International Cooperation（Office of Taiwan, Hong Kong, Macao Affairs）
| 综合处 |
General Office |
| 国际组织处 |
Division of International Organizations |
| 欧美大处 |
Division of European , American and Oceanian Affairs |
| 亚非处（援外处） |
Division of Asian and African Affairs （Division of Medical Aid to Developing Countries） |
| 台港澳处 |
Division of Taiwan, Hong Kong and Macao Affairs |
保健局Bureau of Health Care for Senior Officials
| 办公室 |
General Office |
| 保健处 |
Division of Health Care |
| 医疗处 |
Division of Medical Care |
| 预防与健康教育处 |
Division of Disease Prevention and Health Education |
直属机关党委Committee of the Communist Party of China at Ministry of Health
| 办公室 （宣传处） |
General Office （Division of Advocacy） |
| 组织处（统战处） |
Division of Organization （Division of United Fronts） |
| 工会（团委） |
Labor Union Office （Youth League Committee） |
离退休干部局Bureau of the Retired Personnel
| 办公室 |
General Office |
| 组织活动处 |
Division of Activities |
| 生活福利处 |
Division of Welfare |
| 服务处 |
Division of Service |
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